Monday, July 4, 2016
Time | Event | |
10:00 - 10:15 | Welcome | |
10:15 - 12:15 | Epigenomics – “linear” | |
10:15 - 10:45 | › WBS: a computational pipeline for the treatment of whole-genome high-throughput bisulfite sequencing data - Eric Bonnet, Centre National de Génotypage | |
10:45 - 11:15 | › Investigating transcription factor binding using DNase-seq datasets - Anaïs Bardet, Friedrich Miescher Institute for Biomedical Research | |
11:15 - 11:45 | › Efficiency and the quality of methylation calls of RRBS and WGBS pipelines - Yassen Assenov, Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center | |
11:45 - 12:15 | › DeepBlue: Diving into Epigenomic Data - Felipe Albrecht, Max Planck Institute for Informatics | |
12:15 - 13:30 | Lunch | |
13:30 - 15:30 | Epigenomics – “3D” | |
13:30 - 14:00 | › Long-range chromatin interaction mapping: From quality assessment to the implementation solutions for the analysis of temporal 3D-chromatin reorganization - Matthias Blum, Institut de Génétique et de Biologie Moléculaire et Cellulaire | |
14:00 - 14:30 | › Challenges of analyzing Hi-C data - Fidel Ramirez, The Max Planck Institute of Immunobiology and Epigenetics | |
14:30 - 15:00 | › Chromosome conformation dynamics during T cell development - yousra ben zouari, Institut de Génétique et de Biologie Moléculaire et Cellulaire | |
15:00 - 15:30 | › DeepTools2: A flexible platform for deep-sequencing data analysis and exploration. - Devon Ryan, Max Planck Institute of Immunobiology and Epigenetics | |
15:30 - 16:00 | Coffee break | |
16:00 - 18:00 | Cohort analyses | |
16:00 - 16:30 | › Comparative genomics and transcriptomics of several gene families in Vitis genus - Camille Rustenholz, Santé de la Vigne et Qualité du Vin | |
16:30 - 17:00 | › On the implications of cohort-based variation analysis as a new paradigm in cancer genomics - Lars Feuerbach, Deutsches Krebsforschungszentrum | |
17:00 - 17:30 | › The 1002 yeast genomes project: Exploring the genotype-phenotype relationship of Saccharomyces cerevisiae - Jackson Peter, Génétique moléculaire, génomique, microbiologie - Joseph Schacherer, Génétique moléculaire, génomique, microbiologie | |
17:30 - 18:00 | › How can you trust your metagenetics analysis pipeline ? - Léa SIEGWALD, PEGASE-Biosciences, Centre de Recherche en Informatique, Signal et Automatique de Lille, Centre d'infection et d'immunité de Lille, Gènes Diffusion | |
18:30 - 21:30 | Dinner |
Tuesday, July 5, 2016
Time | Event | |
09:00 - 10:30 | Solutions: technology, tools and pipelines | |
09:00 - 09:30 | › How accurate is the Fluidigm C1 Technology for single-cell transcriptome analysis? - Constance Vagne, Institut de Génétique et de Biologie Moléculaire et Cellulaire | |
09:30 - 10:00 | › Standardizing chromatin research: a simple and universal method for ChIP-seq - Laura Arrigoni, Max Planck institute of immunobiology and epigenetics - Ulrike Boenisch, Max Planck institute of immunobiology and epigenetics | |
10:00 - 10:30 | › HPC development in the context of large NGS analysis - Frederic Jarlier, Institut Curie section Recherche | |
10:30 - 11:00 | Coffee break | |
11:00 - 12:30 | Solutions: technology, tools and pipelines | |
11:00 - 11:30 | › A new tool for non hybrid correction of long noisy reads - Eric Rivals, Institut de Biologie Computationnelle, Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier | |
11:30 - 12:00 | › The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update - Björn Grüning, Uni-Freiburg | |
12:00 - 12:30 | › STARK: A Next-Generation Sequencing data analysis pipeline for clinical diagnosis. - Amandine Velt, Laboratoires de diagnostic génétique, Unité de Génétique Moléculaire, IGMA - Antony Lebéchec, Institut Régional du Cancer - Alsace | |
12:30 - 12:45 | Closing |